Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2468058..2468329 | Replicon | chromosome |
| Accession | NZ_CP010125 | ||
| Organism | Escherichia coli strain C8 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2468096..2468199 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2468058..2468329 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG30_RS12780 | 2465215..2466654 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RG30_RS12785 | 2466772..2467008 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG30_RS12790 | 2467113..2467304 | + | 192 | WP_000457842.1 | YebW family protein | - |
| RG30_RS12795 | 2467305..2467961 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2468058..2468329 | + | 272 | - | - | Antitoxin |
| - | 2468096..2468199 | - | 104 | - | - | Toxin |
| RG30_RS12805 | 2468357..2468698 | - | 342 | WP_000976492.1 | YebY family protein | - |
| RG30_RS12810 | 2468711..2469583 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| RG30_RS12815 | 2469587..2469961 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| RG30_RS12820 | 2470100..2470330 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG30_RS12825 | 2470432..2471088 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| RG30_RS12830 | 2471112..2471774 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T50536 NZ_CP010125:c2468199-2468096 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT50536 NZ_CP010125:2468058-2468329 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
