Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2108954..2109225 | Replicon | chromosome |
| Accession | NZ_CP009859 | ||
| Organism | Escherichia coli strain ECONIH1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2108992..2109095 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2108954..2109225 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECONIH1_RS10560 | 2106111..2107550 | + | 1440 | WP_024181822.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECONIH1_RS10565 | 2107668..2107904 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECONIH1_RS10570 | 2108009..2108200 | + | 192 | WP_001296140.1 | YebW family protein | - |
| ECONIH1_RS10575 | 2108201..2108857 | - | 657 | WP_022645801.1 | protein-serine/threonine phosphatase | - |
| - | 2108954..2109225 | + | 272 | - | - | Antitoxin |
| - | 2108992..2109095 | - | 104 | - | - | Toxin |
| ECONIH1_RS10585 | 2109253..2109594 | - | 342 | WP_000976472.1 | YebY family protein | - |
| ECONIH1_RS10590 | 2109607..2110479 | - | 873 | WP_022645802.1 | copper homeostasis membrane protein CopD | - |
| ECONIH1_RS10595 | 2110483..2110857 | - | 375 | WP_022645803.1 | CopC domain-containing protein YobA | - |
| ECONIH1_RS10600 | 2110996..2111226 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECONIH1_RS10605 | 2111328..2111984 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| ECONIH1_RS10610 | 2112008..2112670 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T50017 NZ_CP009859:c2109095-2108992 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT50017 NZ_CP009859:2108954-2109225 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
