Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2725309..2725510 | Replicon | chromosome |
| Accession | NZ_CP009854 | ||
| Organism | UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2725314..2725417 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2725309..2725510 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECNIH5_RS12820 (ECNIH5_12820) | 2721571..2723019 | + | 1449 | WP_227022505.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECNIH5_RS12825 (ECNIH5_12825) | 2723124..2723363 | + | 240 | WP_006811010.1 | YebV family protein | - |
| ECNIH5_RS12830 (ECNIH5_12830) | 2723398..2724042 | - | 645 | WP_038416258.1 | protein-serine/threonine phosphatase | - |
| ECNIH5_RS12835 (ECNIH5_12835) | 2724210..2725190 | + | 981 | WP_038416259.1 | VirK/YbjX family protein | - |
| ECNIH5_RS24125 | 2725236..2725433 | + | 198 | WP_071881497.1 | hypothetical protein | - |
| - | 2725309..2725510 | + | 202 | - | - | Antitoxin |
| - | 2725314..2725417 | - | 104 | - | - | Toxin |
| ECNIH5_RS12840 (ECNIH5_12840) | 2725559..2725897 | - | 339 | WP_022648464.1 | YebY family protein | - |
| ECNIH5_RS12845 (ECNIH5_12845) | 2725914..2726783 | - | 870 | WP_038416260.1 | copper homeostasis membrane protein CopD | - |
| ECNIH5_RS12850 (ECNIH5_12850) | 2726785..2727156 | - | 372 | WP_038416261.1 | CopC domain-containing protein YobA | - |
| ECNIH5_RS12855 (ECNIH5_12855) | 2727294..2727524 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| ECNIH5_RS12860 (ECNIH5_12860) | 2727636..2728274 | + | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| ECNIH5_RS12865 (ECNIH5_12865) | 2728299..2728961 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T49993 NZ_CP009854:c2725417-2725314 [Enterobacter cloacae]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT49993 NZ_CP009854:2725309-2725510 [Enterobacter cloacae]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGGCGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGGCGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
