Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 339881..339975 Replicon chromosome
Accession NZ_CP009759
Organism Yersinia pseudotuberculosis strain EP2/+

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 339882..339975 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 339881..339975 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BZ20_RS01975 335198..337276 - 2079 WP_012413652.1 flagellar biosynthesis protein FlhA -
BZ20_RS01980 337276..338436 - 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
BZ20_RS01985 338844..339302 + 459 WP_002211098.1 hypothetical protein -
BZ20_RS01990 339296..339622 + 327 WP_002211097.1 DUF1493 family protein -
- 339881..339975 + 95 - - Antitoxin
- 339882..339975 - 94 - - Toxin
BZ20_RS02000 340145..340486 - 342 WP_002211095.1 YebY family protein -
BZ20_RS02005 340583..341467 - 885 WP_038399959.1 copper homeostasis membrane protein CopD -
BZ20_RS02010 341470..341856 - 387 WP_002211093.1 CopC domain-containing protein YobA -
BZ20_RS02015 342243..342752 - 510 WP_002211092.1 non-heme ferritin -
BZ20_RS02020 343153..343383 + 231 WP_002211091.1 DNA polymerase III subunit theta -
BZ20_RS02025 343443..344393 - 951 WP_011192157.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T49628 NZ_CP009759:c339975-339882 [Yersinia pseudotuberculosis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT49628 NZ_CP009759:339881-339975 [Yersinia pseudotuberculosis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References