Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1130363..1130457 | Replicon | chromosome |
| Accession | NZ_CP009757 | ||
| Organism | Yersinia pseudotuberculosis strain MD67 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1130363..1130456 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1130363..1130457 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BZ21_RS05170 | 1125953..1126903 | + | 951 | WP_011192157.1 | prolyl aminopeptidase | - |
| BZ21_RS05175 | 1126963..1127193 | - | 231 | WP_002211091.1 | DNA polymerase III subunit theta | - |
| BZ21_RS05180 | 1127594..1128103 | + | 510 | WP_002211092.1 | non-heme ferritin | - |
| BZ21_RS05185 | 1128482..1128868 | + | 387 | WP_002211093.1 | CopC domain-containing protein YobA | - |
| BZ21_RS05190 | 1128871..1129755 | + | 885 | WP_012304224.1 | copper homeostasis membrane protein CopD | - |
| BZ21_RS05195 | 1129852..1130193 | + | 342 | WP_002211095.1 | YebY family protein | - |
| - | 1130363..1130456 | + | 94 | - | - | Toxin |
| - | 1130363..1130457 | - | 95 | - | - | Antitoxin |
| BZ21_RS05205 | 1130716..1131042 | - | 327 | WP_002211097.1 | DUF1493 family protein | - |
| BZ21_RS05210 | 1131249..1132457 | + | 1209 | WP_002209743.1 | IS256 family transposase | - |
| BZ21_RS05215 | 1132401..1132817 | - | 417 | Protein_979 | hypothetical protein | - |
| BZ21_RS05220 | 1133234..1134208 | - | 975 | WP_012413651.1 | hypothetical protein | - |
| BZ21_RS22950 | 1134230..1134613 | - | 384 | WP_158499507.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 1131249..1132457 | 1208 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T49616 NZ_CP009757:1130363-1130456 [Yersinia pseudotuberculosis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 95 bp
>AT49616 NZ_CP009757:c1130457-1130363 [Yersinia pseudotuberculosis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
