Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2124546..2124817 | Replicon | chromosome |
| Accession | NZ_CP009166 | ||
| Organism | Escherichia coli 1303 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2124584..2124687 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2124546..2124817 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EC1303_RS10460 | 2121703..2123142 | + | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EC1303_RS10465 | 2123260..2123496 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| EC1303_RS10470 | 2123601..2123792 | + | 192 | WP_001338167.1 | YebW family protein | - |
| EC1303_RS10475 | 2123793..2124449 | - | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| - | 2124546..2124817 | + | 272 | - | - | Antitoxin |
| - | 2124584..2124687 | - | 104 | - | - | Toxin |
| EC1303_RS10485 | 2124845..2125186 | - | 342 | WP_000976472.1 | YebY family protein | - |
| EC1303_RS10490 | 2125199..2126071 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| EC1303_RS10495 | 2126075..2126449 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EC1303_RS10500 | 2126588..2126818 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EC1303_RS10505 | 2126920..2127576 | + | 657 | WP_041124109.1 | carbon-nitrogen hydrolase family protein | - |
| EC1303_RS10510 | 2127600..2128262 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T48514 NZ_CP009166:c2124687-2124584 [Escherichia coli 1303]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT48514 NZ_CP009166:2124546-2124817 [Escherichia coli 1303]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
