Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 597148..597242 Replicon chromosome
Accession NZ_CP008943
Organism Yersinia pseudotuberculosis strain ATCC 6904

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 597149..597242 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 597148..597242 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DJ40_RS02740 592465..594543 - 2079 WP_012413652.1 flagellar biosynthesis protein FlhA -
DJ40_RS02745 594543..595703 - 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
DJ40_RS02750 596111..596569 + 459 WP_002211098.1 hypothetical protein -
DJ40_RS02755 596563..596889 + 327 WP_002211097.1 DUF1493 family protein -
- 597148..597242 + 95 - - Antitoxin
- 597149..597242 - 94 - - Toxin
DJ40_RS02765 597412..597753 - 342 WP_002211095.1 YebY family protein -
DJ40_RS02770 597850..598734 - 885 WP_038399959.1 copper homeostasis membrane protein CopD -
DJ40_RS02775 598737..599123 - 387 WP_002211093.1 CopC domain-containing protein YobA -
DJ40_RS02780 599518..600027 - 510 WP_002211092.1 non-heme ferritin -
DJ40_RS02785 600428..600658 + 231 WP_002211091.1 DNA polymerase III subunit theta -
DJ40_RS02790 600718..601668 - 951 WP_011192157.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T47953 NZ_CP008943:c597242-597149 [Yersinia pseudotuberculosis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT47953 NZ_CP008943:597148-597242 [Yersinia pseudotuberculosis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References