Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2687284..2687384 | Replicon | chromosome |
| Accession | NZ_CP007448 | ||
| Organism | Yersinia enterocolitica LC20 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2687292..2687384 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2687284..2687384 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LC20_RS12990 | 2682306..2682638 | + | 333 | WP_025378517.1 | hypothetical protein | - |
| LC20_RS12995 | 2682827..2683141 | + | 315 | WP_025378518.1 | hypothetical protein | - |
| LC20_RS13000 | 2683155..2685308 | + | 2154 | WP_025378519.1 | hypothetical protein | - |
| LC20_RS13005 | 2685305..2685817 | + | 513 | WP_025378520.1 | siphovirus Gp157 family protein | - |
| LC20_RS13010 | 2685890..2686156 | + | 267 | WP_025378521.1 | excisionase | - |
| LC20_RS13015 | 2686131..2687213 | + | 1083 | WP_025378522.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2687284..2687384 | + | 101 | - | - | Antitoxin |
| - | 2687292..2687384 | - | 93 | - | - | Toxin |
| LC20_RS13020 | 2687531..2688739 | - | 1209 | WP_025378469.1 | IS256 family transposase | - |
| LC20_RS13025 | 2688879..2689220 | - | 342 | WP_025378523.1 | YebY family protein | - |
| LC20_RS13030 | 2689317..2690201 | - | 885 | WP_025378524.1 | copper homeostasis membrane protein CopD | - |
| LC20_RS13035 | 2690203..2690589 | - | 387 | WP_025378525.1 | CopC domain-containing protein YobA | - |
| LC20_RS13040 | 2690981..2691490 | - | 510 | WP_025378526.1 | non-heme ferritin | - |
| LC20_RS13045 | 2691885..2692118 | + | 234 | WP_025378527.1 | DNA polymerase III subunit theta | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2638605..2694299 | 55694 | |
| - | flank | IS/Tn | - | - | 2687531..2688739 | 1208 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 bp
>T46454 NZ_CP007448:c2687384-2687292 [Yersinia enterocolitica LC20]
TAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTAT
TCGGTCTTTTTTT
TAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTAT
TCGGTCTTTTTTT
Antitoxin
Download Length: 101 bp
>AT46454 NZ_CP007448:2687284-2687384 [Yersinia enterocolitica LC20]
AACAAGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAACGTAGGCTTA
AACAAGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAACGTAGGCTTA
