Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2678031..2678299 | Replicon | chromosome |
| Accession | NZ_CP007394 | ||
| Organism | Escherichia coli strain ST2747 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2678069..2678172 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2678031..2678299 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CF60_RS12945 | 2675188..2676627 | + | 1440 | WP_025210565.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CF60_RS12950 | 2676745..2676981 | + | 237 | WP_025210566.1 | DUF1480 family protein | - |
| CF60_RS12955 | 2677086..2677277 | + | 192 | WP_001296140.1 | YebW family protein | - |
| CF60_RS12960 | 2677278..2677934 | - | 657 | WP_025210567.1 | protein-serine/threonine phosphatase | - |
| - | 2678031..2678299 | + | 269 | - | - | Antitoxin |
| - | 2678069..2678172 | - | 104 | - | - | Toxin |
| CF60_RS12970 | 2678329..2678670 | - | 342 | WP_000976472.1 | YebY family protein | - |
| CF60_RS12975 | 2678683..2679555 | - | 873 | WP_025210568.1 | copper homeostasis membrane protein CopD | - |
| CF60_RS12980 | 2679559..2679933 | - | 375 | WP_000168745.1 | CopC domain-containing protein YobA | - |
| CF60_RS12985 | 2680072..2680302 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CF60_RS12990 | 2680404..2681060 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| CF60_RS12995 | 2681084..2681746 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2669801..2685611 | 15810 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T46392 NZ_CP007394:c2678172-2678069 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT46392 NZ_CP007394:2678031-2678299 [Escherichia coli]
AAAGTCAGCGAAAGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAAGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
