Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2728632..2728900 | Replicon | chromosome |
| Accession | NZ_CP007392 | ||
| Organism | Escherichia coli strain ST2747 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2728670..2728773 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2728632..2728900 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CF58_RS13190 | 2725789..2727228 | + | 1440 | WP_025210565.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CF58_RS13195 | 2727346..2727582 | + | 237 | WP_025210566.1 | DUF1480 family protein | - |
| CF58_RS13200 | 2727687..2727878 | + | 192 | WP_001296140.1 | YebW family protein | - |
| CF58_RS13205 | 2727879..2728535 | - | 657 | WP_025210567.1 | protein-serine/threonine phosphatase | - |
| - | 2728632..2728900 | + | 269 | - | - | Antitoxin |
| - | 2728670..2728773 | - | 104 | - | - | Toxin |
| CF58_RS13215 | 2728930..2729271 | - | 342 | WP_000976472.1 | YebY family protein | - |
| CF58_RS13220 | 2729284..2730156 | - | 873 | WP_025210568.1 | copper homeostasis membrane protein CopD | - |
| CF58_RS13225 | 2730160..2730534 | - | 375 | WP_000168745.1 | CopC domain-containing protein YobA | - |
| CF58_RS13230 | 2730673..2730903 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CF58_RS13235 | 2731005..2731661 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| CF58_RS13240 | 2731685..2732347 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2720402..2753398 | 32996 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T46334 NZ_CP007392:c2728773-2728670 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT46334 NZ_CP007392:2728632-2728900 [Escherichia coli]
AAAGTCAGCGAAAGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAAGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
