Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4384217..4384449 | Replicon | chromosome |
| Accession | NZ_CP007025 | ||
| Organism | Escherichia albertii KF1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4384345..4384447 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4384217..4384449 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EAKF1_RS21815 | 4380767..4381429 | - | 663 | WP_025238865.1 | exodeoxyribonuclease X | - |
| EAKF1_RS21820 | 4381453..4382109 | - | 657 | WP_025238866.1 | carbon-nitrogen hydrolase family protein | - |
| EAKF1_RS21825 | 4382211..4382441 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| EAKF1_RS21830 | 4382580..4382957 | + | 378 | WP_000741562.1 | CopC domain-containing protein YobA | - |
| EAKF1_RS21835 | 4382961..4383833 | + | 873 | WP_025238867.1 | copper homeostasis membrane protein CopD | - |
| EAKF1_RS21840 | 4383846..4384187 | + | 342 | WP_000976487.1 | YebY family protein | - |
| - | 4384217..4384449 | - | 233 | - | - | Antitoxin |
| - | 4384345..4384447 | + | 103 | - | - | Toxin |
| EAKF1_RS21855 | 4385069..4385648 | + | 580 | Protein_4130 | bfpT-regulated chaperone | - |
| EAKF1_RS26665 | 4386105..4386269 | + | 165 | WP_157944741.1 | hypothetical protein | - |
| EAKF1_RS21860 | 4386843..4387163 | + | 321 | WP_000086028.1 | hypothetical protein | - |
| EAKF1_RS21865 | 4387236..4388693 | + | 1458 | WP_024164813.1 | Trk system potassium transporter TrkG | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 4376822..4390276 | 13454 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T45870 NZ_CP007025:4384345-4384447 [Escherichia albertii KF1]
GCAAGGCAACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT45870 NZ_CP007025:c4384449-4384217 [Escherichia albertii KF1]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTCAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTCAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
