Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2041679..2041761 Replicon chromosome
Accession NZ_CP006929
Organism Dickeya zeae EC1

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2041681..2041761 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2041679..2041761 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
W909_RS08940 2037083..2037727 - 645 WP_016941269.1 amino acid ABC transporter permease -
W909_RS08945 2037724..2038464 - 741 WP_016941270.1 amino acid ABC transporter permease -
W909_RS08950 2038513..2039349 - 837 WP_016941271.1 transporter substrate-binding domain-containing protein -
W909_RS08955 2039482..2039874 - 393 WP_016941272.1 RidA family protein -
W909_RS08960 2040278..2041030 + 753 WP_016941273.1 IclR family transcriptional regulator -
- 2041679..2041761 + 83 - - Antitoxin
- 2041681..2041761 - 81 - - Toxin
W909_RS08970 2041931..2042269 - 339 WP_016941275.1 YebY family protein -
W909_RS08975 2042565..2042960 + 396 WP_016941276.1 hypothetical protein -
W909_RS08980 2043062..2044357 - 1296 WP_016941277.1 YeaH/YhbH family protein -
W909_RS08985 2044376..2046310 - 1935 WP_012884836.1 protein kinase YeaG -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 81 bp

>T45777 NZ_CP006929:c2041761-2041681 [Dickeya zeae EC1]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T

Antitoxin


Download         Length: 83 bp

>AT45777 NZ_CP006929:2041679-2041761 [Dickeya zeae EC1]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References