Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4130767..4130907 | Replicon | chromosome |
| Accession | NZ_CP005927 | ||
| Organism | Serratia sp. FS14 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4130767..4130863 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4130767..4130907 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L085_RS18785 | 4126203..4126538 | - | 336 | WP_004940957.1 | hypothetical protein | - |
| L085_RS18790 | 4126587..4126892 | - | 306 | WP_044031454.1 | hypothetical protein | - |
| L085_RS24835 | 4127064..4127282 | - | 219 | WP_071841646.1 | hypothetical protein | - |
| L085_RS18795 | 4127509..4128708 | - | 1200 | WP_021504847.1 | trans-2-enoyl-CoA reductase family protein | - |
| L085_RS18800 | 4128878..4129228 | - | 351 | WP_043141612.1 | DUF4377 domain-containing protein | - |
| L085_RS18805 | 4129477..4129821 | + | 345 | WP_033642719.1 | hypothetical protein | - |
| L085_RS18810 | 4129896..4130114 | + | 219 | WP_044032093.1 | hypothetical protein | - |
| L085_RS18815 | 4130111..4130515 | - | 405 | WP_044031455.1 | hypothetical protein | - |
| - | 4130767..4130863 | - | 97 | - | - | Toxin |
| - | 4130767..4130907 | + | 141 | - | - | Antitoxin |
| L085_RS18820 | 4131004..4131345 | - | 342 | WP_004940890.1 | YebY family protein | - |
| L085_RS18825 | 4131415..4132296 | - | 882 | WP_044031456.1 | copper homeostasis membrane protein CopD | - |
| L085_RS18830 | 4132299..4132715 | - | 417 | WP_046686875.1 | CopC domain-containing protein YobA | - |
| L085_RS18835 | 4133006..4133524 | - | 519 | WP_015377481.1 | non-heme ferritin | - |
| L085_RS18840 | 4133869..4134099 | + | 231 | WP_044031457.1 | DNA polymerase III subunit theta | - |
| L085_RS18845 | 4134131..4135084 | - | 954 | WP_044032095.1 | prolyl aminopeptidase | - |
| L085_RS18850 | 4135241..4135636 | - | 396 | WP_015377479.1 | RidA family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T45092 NZ_CP005927:c4130863-4130767 [Serratia sp. FS14]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT45092 NZ_CP005927:4130767-4130907 [Serratia sp. FS14]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
