Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2252422..2252690 | Replicon | chromosome |
| Accession | NZ_AP026788 | ||
| Organism | Escherichia coli strain IPCEC42 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2252550..2252652 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2252422..2252690 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OPA56_RS10915 | 2248975..2249637 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| OPA56_RS10920 | 2249661..2250317 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| OPA56_RS10925 | 2250419..2250649 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| OPA56_RS10930 | 2250788..2251162 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| OPA56_RS10935 | 2251166..2252038 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| OPA56_RS10940 | 2252051..2252392 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2252422..2252690 | - | 269 | - | - | Antitoxin |
| - | 2252550..2252652 | + | 103 | - | - | Toxin |
| OPA56_RS10945 | 2252787..2253443 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| OPA56_RS10950 | 2253444..2253635 | - | 192 | WP_001296140.1 | YebW family protein | - |
| OPA56_RS10955 | 2253740..2253976 | - | 237 | WP_001295499.1 | YebV family protein | - |
| OPA56_RS10960 | 2254093..2255532 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T42693 NZ_AP026788:2252550-2252652 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT42693 NZ_AP026788:c2252690-2252422 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
