Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1337207..1337441 | Replicon | chromosome |
| Accession | NZ_AP026092 | ||
| Organism | Escherichia coli strain 27_141091 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1337337..1337440 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1337207..1337441 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO959_RS06350 | 1333762..1334424 | - | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
| OO959_RS06355 | 1334448..1335104 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| OO959_RS06360 | 1335206..1335436 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| OO959_RS06365 | 1335575..1335949 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| OO959_RS06370 | 1335953..1336825 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| OO959_RS06375 | 1336838..1337179 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 1337207..1337441 | - | 235 | - | - | Antitoxin |
| - | 1337337..1337440 | + | 104 | - | - | Toxin |
| OO959_RS06380 | 1337572..1338648 | - | 1077 | WP_045893699.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| OO959_RS06385 | 1338614..1338895 | - | 282 | WP_001311878.1 | excisionase | - |
| OO959_RS06390 | 1339002..1339190 | - | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - | 1339006..1339184 | + | 179 | NuclAT_0 | - | - |
| - | 1339006..1339184 | + | 179 | NuclAT_0 | - | - |
| - | 1339006..1339184 | + | 179 | NuclAT_0 | - | - |
| - | 1339006..1339184 | + | 179 | NuclAT_0 | - | - |
| OO959_RS06395 | 1339183..1339377 | - | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| OO959_RS06400 | 1339434..1340243 | - | 810 | WP_000166313.1 | recombination protein RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1331705..1398687 | 66982 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41992 NZ_AP026092:1337337-1337440 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT41992 NZ_AP026092:c1337441-1337207 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
