Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2070528..2070731 | Replicon | chromosome |
| Accession | NZ_AP025915 | ||
| Organism | Enterobacter hormaechei strain FUJ80377 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2070621..2070724 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2070528..2070731 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGK73_RS09990 (FJMB80377_19530) | 2067065..2067727 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| NGK73_RS09995 (FJMB80377_19540) | 2067752..2068402 | - | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| NGK73_RS10000 (FJMB80377_19550) | 2068514..2068744 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGK73_RS10005 (FJMB80377_19560) | 2068882..2069253 | + | 372 | WP_032648690.1 | CopC domain-containing protein YobA | - |
| NGK73_RS10010 (FJMB80377_19570) | 2069255..2070124 | + | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| NGK73_RS10015 (FJMB80377_19580) | 2070141..2070479 | + | 339 | WP_003859787.1 | YebY family protein | - |
| - | 2070528..2070731 | - | 204 | - | - | Antitoxin |
| - | 2070621..2070724 | + | 104 | - | - | Toxin |
| NGK73_RS10020 (FJMB80377_19590) | 2070802..2071887 | - | 1086 | WP_023300431.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| NGK73_RS10025 (FJMB80377_19600) | 2071856..2072128 | - | 273 | WP_023300430.1 | excisionase | - |
| NGK73_RS10030 (FJMB80377_19610) | 2072288..2073040 | - | 753 | WP_032648687.1 | methyltransferase | - |
| NGK73_RS10035 | 2073090..2073302 | - | 213 | WP_223259311.1 | DUF4222 domain-containing protein | - |
| NGK73_RS10040 (FJMB80377_19620) | 2073329..2073544 | - | 216 | WP_032648685.1 | TraR/DksA family transcriptional regulator | - |
| NGK73_RS10045 (FJMB80377_19630) | 2073636..2073836 | - | 201 | WP_032647498.1 | hypothetical protein | - |
| NGK73_RS10050 (FJMB80377_19640) | 2073833..2074105 | - | 273 | WP_080337312.1 | DUF5405 family protein | - |
| NGK73_RS10055 (FJMB80377_19650) | 2074102..2074320 | - | 219 | WP_006176198.1 | hypothetical protein | - |
| NGK73_RS10060 (FJMB80377_19660) | 2074317..2074868 | - | 552 | WP_032647502.1 | phage N-6-adenine-methyltransferase | - |
| NGK73_RS10065 (FJMB80377_19670) | 2074865..2075032 | - | 168 | WP_162875207.1 | hypothetical protein | - |
| NGK73_RS10070 | 2075084..2075188 | - | 105 | Protein_1962 | regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrB / gtrA | 2003186..2120094 | 116908 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41675 NZ_AP025915:2070621-2070724 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT41675 NZ_AP025915:c2070731-2070528 [Enterobacter hormaechei]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
