Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2932425..2932628 | Replicon | chromosome |
| Accession | NZ_AP025907 | ||
| Organism | Enterobacter hormaechei strain FUJ80375 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2932432..2932535 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2932425..2932628 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGK01_RS14075 | 2927968..2928072 | + | 105 | Protein_2758 | regulator | - |
| NGK01_RS14080 (FJMB80375_27630) | 2928124..2928291 | + | 168 | WP_162875207.1 | hypothetical protein | - |
| NGK01_RS14085 (FJMB80375_27640) | 2928288..2928839 | + | 552 | WP_032647502.1 | phage N-6-adenine-methyltransferase | - |
| NGK01_RS14090 (FJMB80375_27650) | 2928836..2929054 | + | 219 | WP_006176198.1 | hypothetical protein | - |
| NGK01_RS14095 (FJMB80375_27660) | 2929051..2929323 | + | 273 | WP_080337312.1 | DUF5405 family protein | - |
| NGK01_RS14100 (FJMB80375_27670) | 2929320..2929520 | + | 201 | WP_032647498.1 | hypothetical protein | - |
| NGK01_RS14105 (FJMB80375_27680) | 2929612..2929827 | + | 216 | WP_032648685.1 | TraR/DksA family transcriptional regulator | - |
| NGK01_RS14110 | 2929854..2930066 | + | 213 | WP_223259311.1 | DUF4222 domain-containing protein | - |
| NGK01_RS14115 (FJMB80375_27690) | 2930116..2930868 | + | 753 | WP_032648687.1 | methyltransferase | - |
| NGK01_RS14120 (FJMB80375_27700) | 2931028..2931300 | + | 273 | WP_023300430.1 | excisionase | - |
| NGK01_RS14125 (FJMB80375_27710) | 2931269..2932354 | + | 1086 | WP_023300431.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2932425..2932628 | + | 204 | - | - | Antitoxin |
| - | 2932432..2932535 | - | 104 | - | - | Toxin |
| NGK01_RS14130 (FJMB80375_27720) | 2932677..2933015 | - | 339 | WP_003859787.1 | YebY family protein | - |
| NGK01_RS14135 (FJMB80375_27730) | 2933032..2933901 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| NGK01_RS14140 (FJMB80375_27740) | 2933903..2934274 | - | 372 | WP_032648690.1 | CopC domain-containing protein YobA | - |
| NGK01_RS14145 (FJMB80375_27750) | 2934412..2934642 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGK01_RS14150 (FJMB80375_27760) | 2934754..2935404 | + | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| NGK01_RS14155 (FJMB80375_27770) | 2935429..2936091 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | gtrA / gtrB | 2888763..2933015 | 44252 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41638 NZ_AP025907:c2932535-2932432 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT41638 NZ_AP025907:2932425-2932628 [Enterobacter hormaechei]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
