Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2890448..2890651 | Replicon | chromosome |
| Accession | NZ_AP025883 | ||
| Organism | Enterobacter hormaechei strain FUJ80158 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2890455..2890558 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2890448..2890651 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGK56_RS13785 | 2885991..2886095 | + | 105 | Protein_2700 | regulator | - |
| NGK56_RS13790 (FJMB80158_27060) | 2886147..2886314 | + | 168 | WP_162875207.1 | hypothetical protein | - |
| NGK56_RS13795 (FJMB80158_27070) | 2886311..2886862 | + | 552 | WP_032647502.1 | phage N-6-adenine-methyltransferase | - |
| NGK56_RS13800 (FJMB80158_27080) | 2886859..2887077 | + | 219 | WP_006176198.1 | hypothetical protein | - |
| NGK56_RS13805 (FJMB80158_27090) | 2887074..2887346 | + | 273 | WP_080337312.1 | DUF5405 family protein | - |
| NGK56_RS13810 (FJMB80158_27100) | 2887343..2887543 | + | 201 | WP_032647498.1 | hypothetical protein | - |
| NGK56_RS13815 (FJMB80158_27110) | 2887635..2887850 | + | 216 | WP_032648685.1 | TraR/DksA family transcriptional regulator | - |
| NGK56_RS13820 | 2887877..2888089 | + | 213 | WP_223259311.1 | DUF4222 domain-containing protein | - |
| NGK56_RS13825 (FJMB80158_27120) | 2888139..2888891 | + | 753 | WP_032648687.1 | methyltransferase | - |
| NGK56_RS13830 (FJMB80158_27130) | 2889051..2889323 | + | 273 | WP_023300430.1 | excisionase | - |
| NGK56_RS13835 (FJMB80158_27140) | 2889292..2890377 | + | 1086 | WP_023300431.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2890448..2890651 | + | 204 | - | - | Antitoxin |
| - | 2890455..2890558 | - | 104 | - | - | Toxin |
| NGK56_RS13840 (FJMB80158_27150) | 2890700..2891038 | - | 339 | WP_003859787.1 | YebY family protein | - |
| NGK56_RS13845 (FJMB80158_27160) | 2891055..2891924 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| NGK56_RS13850 (FJMB80158_27170) | 2891926..2892297 | - | 372 | WP_032648690.1 | CopC domain-containing protein YobA | - |
| NGK56_RS13855 (FJMB80158_27180) | 2892435..2892665 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGK56_RS13860 (FJMB80158_27190) | 2892777..2893427 | + | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| NGK56_RS13865 (FJMB80158_27200) | 2893452..2894114 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrA / gtrB | 2835730..2896171 | 60441 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41524 NZ_AP025883:c2890558-2890455 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT41524 NZ_AP025883:2890448-2890651 [Enterobacter hormaechei]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
