Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2656710..2656911 | Replicon | chromosome |
| Accession | NZ_AP025777 | ||
| Organism | Enterobacter hormaechei strain FUJ80007 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2656715..2656818 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2656710..2656911 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGJ89_RS12585 (FJMB80007_24600) | 2652978..2654420 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NGJ89_RS12590 (FJMB80007_24610) | 2654525..2654764 | + | 240 | WP_006811010.1 | YebV family protein | - |
| NGJ89_RS12595 (FJMB80007_24620) | 2654799..2655443 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| NGJ89_RS12600 (FJMB80007_24630) | 2655611..2656591 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| NGJ89_RS12605 (FJMB80007_24640) | 2656637..2656834 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2656710..2656911 | + | 202 | - | - | Antitoxin |
| - | 2656715..2656818 | - | 104 | - | - | Toxin |
| NGJ89_RS12610 (FJMB80007_24650) | 2656960..2657298 | - | 339 | WP_022648464.1 | YebY family protein | - |
| NGJ89_RS12615 (FJMB80007_24660) | 2657315..2658184 | - | 870 | WP_196362403.1 | copper homeostasis membrane protein CopD | - |
| NGJ89_RS12620 (FJMB80007_24670) | 2658186..2658557 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| NGJ89_RS12625 (FJMB80007_24680) | 2658695..2658925 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGJ89_RS12630 (FJMB80007_24690) | 2659037..2659675 | + | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| NGJ89_RS12635 (FJMB80007_24700) | 2659700..2660362 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T40954 NZ_AP025777:c2656818-2656715 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT40954 NZ_AP025777:2656710-2656911 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
