Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2401174..2401442 Replicon chromosome
Accession NZ_AP025741
Organism Escherichia sp. 10290

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2401212..2401315 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2401174..2401442 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QUE74_RS12140 2398331..2399770 + 1440 WP_000057031.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
QUE74_RS12145 2399888..2400124 + 237 WP_001295499.1 YebV family protein -
QUE74_RS12150 2400229..2400420 + 192 WP_001296140.1 YebW family protein -
QUE74_RS12155 2400421..2401077 - 657 WP_000812715.1 protein-serine/threonine phosphatase -
- 2401174..2401442 + 269 - - Antitoxin
- 2401212..2401315 - 104 - - Toxin
QUE74_RS12160 2401472..2401813 - 342 WP_000976467.1 YebY family protein -
QUE74_RS12165 2401826..2402698 - 873 WP_000879325.1 copper homeostasis membrane protein CopD -
QUE74_RS12170 2402702..2403076 - 375 WP_000204695.1 CopC domain-containing protein YobA -
QUE74_RS12175 2403215..2403445 + 231 WP_000916763.1 DNA polymerase III subunit theta -
QUE74_RS12180 2403547..2404203 + 657 WP_000011674.1 carbon-nitrogen hydrolase family protein YobB -
QUE74_RS12185 2404227..2404889 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T40712 NZ_AP025741:c2401315-2401212 [Escherichia sp. 10290]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT40712 NZ_AP025741:2401174-2401442 [Escherichia sp. 10290]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References