Detailed information of TA system TA040273

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): higBA (relBE)/COG4683-HTH_37
• Location: 13609..14266
• Replicon: plasmid pTMTA97342
• Accession: NZ_AP025336
• Organism: Phytobacter diazotrophicus strain TA9734

Toxin (Protein)

• Gene name: higB
• Uniprot ID: U3PDC3
• Locus tag: L6445_RS28405
• Protein ID: WP_000270043.1
• Coordinates: 13916..14266 (-)
• Length: 117 a.a.

Antitoxin (Protein)

• Gene name: higA
• Uniprot ID: -
• Locus tag: L6445_RS28400
• Protein ID: WP_000124640.1
• Coordinates: 13609..13911 (-)
• Length: 101 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
L6445_RS28355 (PDTA9734_56070)	9234..9662	+	429	WP_000591074.1	hypothetical protein	-
L6445_RS28360 (PDTA9734_56080)	9719..10078	+	360	WP_000422768.1	hypothetical protein	-
L6445_RS28365 (PDTA9734_56090)	10078..10524	+	447	WP_000919345.1	Fe3+-siderophore ABC transporter permease	-
L6445_RS28370 (PDTA9734_56100)	10521..11039	+	519	WP_000210756.1	nitrite reductase	-
L6445_RS28375 (PDTA9734_56110)	11039..11269	+	231	WP_000972663.1	hypothetical protein	-
L6445_RS28380 (PDTA9734_56120)	11256..12113	+	858	WP_001167032.1	hypothetical protein	-
L6445_RS28385 (PDTA9734_56140)	12344..12871	+	528	WP_001236377.1	thermonuclease family protein	-
L6445_RS28390 (PDTA9734_56150)	12929..13201	+	273	WP_001043047.1	HU family DNA-binding protein	-
L6445_RS28395 (PDTA9734_56160)	13289..13582	+	294	WP_001239997.1	chromosome segregation protein ParM	-
L6445_RS28400 (PDTA9734_56170)	13609..13911	-	303	WP_000124640.1	XRE family transcriptional regulator	Antitoxin
L6445_RS28405 (PDTA9734_56180)	13916..14266	-	351	WP_000270043.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
L6445_RS28410 (PDTA9734_56190)	14429..14977	+	549	WP_001061574.1	transcriptional regulator	-
L6445_RS28415 (PDTA9734_56200)	15318..15512	+	195	WP_000343597.1	hypothetical protein	-
L6445_RS28420 (PDTA9734_56210)	15523..15894	+	372	WP_000516916.1	hypothetical protein	-
L6445_RS28425 (PDTA9734_56220)	15887..16357	+	471	WP_001281821.1	hypothetical protein	-
L6445_RS28430 (PDTA9734_56230)	16372..16707	-	336	WP_000683476.1	hypothetical protein	-
L6445_RS28435 (PDTA9734_56240)	16804..17292	+	489	WP_001273096.1	DUF1643 domain-containing protein	-
L6445_RS28440 (PDTA9734_56250)	17295..17792	+	498	WP_000062185.1	hypothetical protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Conjugative plasmid	fosA3 / aac(6')-IIa / dfrA1 / aadA2 / qacE / sul1 / blaNDM-1 / catB3 / ARR-3 / armA / msr(E) / mph(E) / sul2 / blaTEM-1B	-	1..174343	174343

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin HigB-like (12-106)

Antitoxin

• Cro/C1-type helix-turn-helix domain (33-79)

Sequences

Toxin

Protein

• Length: 117 a.a.
• Molecular weight: 13328.21 Da
• Isoelectric Point: 5.2421

>T40273 WP_000270043.1 NZ_AP025336:c14266-13916 [Phytobacter diazotrophicus]
MWVIETTDTFDEWFDALDDTDRANVLASMMVLRDRGPMLSRPYADTVNGSSYSNMKELRVQSKGDPIRAFFAFDPKRKGI
LLCAGNKTGDEKRFYEVMIPIADREFAAHLDKLKKE

Nucleotide

• Length: 351 bp

>T40273 NZ_AP025336:c14266-13916 [Phytobacter diazotrophicus]
ATGTGGGTCATCGAGACAACCGACACCTTTGATGAGTGGTTCGATGCTCTGGATGATACCGATAGAGCAAACGTGCTGGC
TTCGATGATGGTGCTGCGAGATAGAGGCCCCATGCTGTCGAGGCCATACGCGGATACTGTTAACGGTTCATCCTACAGCA
ACATGAAAGAGCTTCGGGTCCAAAGCAAAGGAGATCCTATCAGAGCGTTCTTTGCGTTCGATCCAAAGCGTAAGGGGATT
CTTCTCTGCGCCGGTAACAAGACCGGGGACGAGAAAAGGTTTTATGAAGTAATGATCCCAATTGCAGACCGTGAGTTTGC
GGCGCACTTGGATAAATTGAAGAAGGAGTGA

Antitoxin

Protein

• Length: 101 a.a.
• Molecular weight: 11006.73 Da
• Isoelectric Point: 7.2036

>AT40273 WP_000124640.1 NZ_AP025336:c13911-13609 [Phytobacter diazotrophicus]
MARTLDQMLATEKPEVVAKAQKAATEMLLNIHLAELRDRMNLTQGEIAASLGVRQPTVSEMEKPGRDLKLSSIKRYVEAS
GGKLRLDVELPDGTHYGFAV

Nucleotide

• Length: 303 bp

>AT40273 NZ_AP025336:c13911-13609 [Phytobacter diazotrophicus]
ATGGCAAGAACTCTTGACCAAATGCTGGCAACAGAAAAGCCTGAGGTTGTTGCCAAAGCACAGAAAGCGGCCACTGAGAT
GTTACTGAACATCCACTTGGCAGAGCTTCGTGATCGCATGAACCTTACCCAGGGGGAAATTGCTGCATCTCTGGGTGTGA
GACAGCCGACAGTCTCCGAGATGGAAAAACCTGGACGAGATCTCAAGCTGTCGTCCATTAAGCGGTACGTTGAGGCCTCC
GGTGGCAAGCTACGCCTCGATGTTGAACTTCCGGACGGCACCCACTACGGCTTTGCCGTTTAA

Structures

Toxin

• AlphaFold DB: A0A7G8AFB9