Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YafQ-RelB
Location 4951924..4952467 Replicon chromosome
Accession NZ_AP025281
Organism Aliamphritea hakodatensis strain PT3

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag PCI15_RS22495 Protein ID WP_271272102.1
Coordinates 4951924..4952196 (-) Length 91 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag PCI15_RS22500 Protein ID WP_271272103.1
Coordinates 4952189..4952467 (-) Length 93 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PCI15_RS22480 4947293..4947952 + 660 WP_271272099.1 ureidoglycolate lyase -
PCI15_RS22485 4948317..4948988 + 672 WP_271272100.1 BRCT domain-containing protein -
PCI15_RS22490 4949566..4951713 - 2148 WP_271272101.1 transporter substrate-binding domain-containing protein -
PCI15_RS22495 4951924..4952196 - 273 WP_271272102.1 type II toxin-antitoxin system YafQ family toxin Toxin
PCI15_RS22500 4952189..4952467 - 279 WP_271272103.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
PCI15_RS22505 4952964..4953269 - 306 WP_271272104.1 4a-hydroxytetrahydrobiopterin dehydratase -
PCI15_RS22510 4953447..4955108 - 1662 WP_271272105.1 BCCT family transporter -
PCI15_RS22515 4955265..4956041 - 777 WP_271272106.1 SDR family oxidoreductase -
PCI15_RS22520 4956215..4957171 - 957 WP_271272107.1 GlxA family transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-89)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-84)


Sequences

Toxin        


Download         Length: 91 a.a.        Molecular weight: 10585.33 Da        Isoelectric Point: 9.7708

>T40242 WP_271272102.1 NZ_AP025281:c4952196-4951924 [Aliamphritea hakodatensis]
MLRLEYSTQFKKDFRKIAKLPIPDVVEVGHVIKELQLGRRLPEKYVDHALSGNWQHYRDCHIKPDLVLIYKTDEGSLKLA
RIGSHSELFR

Download         Length: 273 bp

>T40242 NZ_AP025281:c4952196-4951924 [Aliamphritea hakodatensis]
ATGCTTAGACTTGAGTATTCCACTCAGTTTAAAAAAGATTTCAGGAAAATCGCGAAGCTTCCGATTCCGGATGTTGTAGA
AGTCGGGCATGTTATCAAAGAGTTACAGTTGGGCAGAAGGTTACCTGAGAAGTACGTTGATCATGCTTTATCGGGTAACT
GGCAACATTATCGTGACTGCCATATTAAGCCGGATCTGGTTTTGATTTATAAAACCGATGAAGGCTCCCTCAAGCTGGCC
CGAATAGGCTCGCATAGCGAGTTATTCCGATAG

Antitoxin


Download         Length: 93 a.a.        Molecular weight: 9950.34 Da        Isoelectric Point: 4.3322

>AT40242 WP_271272103.1 NZ_AP025281:c4952467-4952189 [Aliamphritea hakodatensis]
MKTEMLSARIDQDTKLAFTSVCEEMGLSPSQAIKLFAKAVINYGGIPFELKVKRPNSLTADAIAELESGQGNTVDNVEEL
FDDLKAGKLTDA

Download         Length: 279 bp

>AT40242 NZ_AP025281:c4952467-4952189 [Aliamphritea hakodatensis]
ATGAAAACAGAAATGCTGAGCGCCCGGATTGATCAGGATACTAAACTGGCGTTCACCAGTGTCTGCGAGGAGATGGGATT
GAGCCCCTCTCAGGCGATTAAGCTTTTTGCCAAGGCGGTAATTAATTATGGCGGGATACCGTTTGAGCTAAAGGTGAAGC
GTCCTAATTCTCTGACTGCTGATGCGATTGCAGAGCTGGAGTCCGGTCAGGGGAATACAGTTGATAATGTAGAAGAGCTG
TTTGATGACCTGAAGGCAGGTAAGCTTACAGATGCTTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References