Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-RelB
Location 2869658..2870223 Replicon chromosome
Accession NZ_AP025281
Organism Aliamphritea hakodatensis strain PT3

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag PCI15_RS13265 Protein ID WP_271270435.1
Coordinates 2869939..2870223 (+) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag PCI15_RS13260 Protein ID WP_271270434.1
Coordinates 2869658..2869936 (+) Length 93 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PCI15_RS13240 2864791..2867094 - 2304 WP_271270430.1 mechanosensitive ion channel -
PCI15_RS13245 2867134..2867625 - 492 WP_271270431.1 isoprenylcysteine carboxylmethyltransferase family protein -
PCI15_RS13250 2867700..2868596 + 897 WP_271270432.1 endonuclease/exonuclease/phosphatase family protein -
PCI15_RS13255 2868739..2869554 + 816 WP_271270433.1 transporter substrate-binding domain-containing protein -
PCI15_RS13260 2869658..2869936 + 279 WP_271270434.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
PCI15_RS13265 2869939..2870223 + 285 WP_271270435.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PCI15_RS13270 2870341..2872308 - 1968 WP_271270436.1 Rieske 2Fe-2S domain-containing protein -
PCI15_RS13275 2872335..2873510 - 1176 WP_271270437.1 SRPBCC family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-89)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(5-44)


Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 11006.68 Da        Isoelectric Point: 7.0128

>T40240 WP_271270435.1 NZ_AP025281:2869939-2870223 [Aliamphritea hakodatensis]
MIQWSEESLNDREKIFEFLYAFNPAVAEKTDDIIQAKVENLTEQPKLGVKRNNIRGRLLIIPEISVLVSYYTDNAVIRIM
RVLHQKQKFPSETN

Download         Length: 285 bp

>T40240 NZ_AP025281:2869939-2870223 [Aliamphritea hakodatensis]
ATGATTCAATGGAGTGAAGAATCATTAAACGACAGGGAAAAGATATTTGAATTTCTGTACGCATTTAATCCTGCTGTTGC
AGAAAAAACAGATGATATTATTCAGGCAAAAGTTGAGAATCTGACTGAGCAGCCAAAGTTGGGAGTGAAAAGAAACAACA
TCCGCGGCAGACTGCTCATCATTCCTGAAATTTCAGTGCTCGTCTCTTACTACACTGATAATGCTGTCATCCGCATCATG
CGCGTATTGCATCAGAAACAGAAATTCCCTTCAGAGACAAACTGA

Antitoxin


Download         Length: 93 a.a.        Molecular weight: 10773.92 Da        Isoelectric Point: 5.2168

>AT40240 WP_271270434.1 NZ_AP025281:2869658-2869936 [Aliamphritea hakodatensis]
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKVLTHDAWLTEQVNQAFEKLDSEQTTFIDNESAKND
MSARKARIRNRS

Download         Length: 279 bp

>AT40240 NZ_AP025281:2869658-2869936 [Aliamphritea hakodatensis]
ATGGATACCAGAATCCAGTTTCGCGTTGACGAAGAAACGAAACGTCTCGCACAGCAAATGGCAGAAAGCCAGGGACGAAC
ACTCAGCGATGCCTGCCGGGAGCTGACTGAGCAGCTCGCAGAACAACAACGCAAAGTACTGACACATGATGCATGGCTGA
CCGAACAGGTTAATCAGGCATTTGAAAAGCTCGACTCAGAGCAAACTACATTTATCGATAACGAATCAGCAAAAAACGAT
ATGTCGGCGCGTAAAGCCAGAATCCGAAACCGGAGCTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References