Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 706127..706398 | Replicon | chromosome |
| Accession | NZ_AP025180 | ||
| Organism | Escherichia coli strain JP538 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 706165..706268 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 706127..706398 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R5G_RS03640 | 703284..704723 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| R5G_RS03645 | 704841..705077 | + | 237 | WP_001295499.1 | YebV family protein | - |
| R5G_RS03650 | 705182..705373 | + | 192 | WP_000457842.1 | YebW family protein | - |
| R5G_RS03655 | 705374..706030 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 706127..706398 | + | 272 | - | - | Antitoxin |
| - | 706165..706268 | - | 104 | - | - | Toxin |
| R5G_RS03660 | 706426..706767 | - | 342 | WP_000976476.1 | YebY family protein | - |
| R5G_RS03665 | 706780..707652 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| R5G_RS03670 | 707656..708030 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| R5G_RS03675 | 708169..708399 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| R5G_RS03680 | 708501..709157 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| R5G_RS03685 | 709181..709843 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 690287..775383 | 85096 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T40033 NZ_AP025180:c706268-706165 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT40033 NZ_AP025180:706127-706398 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
