Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2783800..2783944 | Replicon | chromosome |
| Accession | NZ_AP024498 | ||
| Organism | Enterobacter asburiae strain En30 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2783806..2783909 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2783800..2783944 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R2TS_RS13345 | 2778958..2780406 | + | 1449 | WP_207167534.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| R2TS_RS13350 | 2780513..2780752 | + | 240 | WP_008500472.1 | YebV family protein | - |
| R2TS_RS13355 | 2780787..2781431 | - | 645 | WP_033145837.1 | protein-serine/threonine phosphatase | - |
| R2TS_RS13360 | 2781597..2782538 | + | 942 | WP_033145838.1 | VirK/YbjX family protein | - |
| R2TS_RS13365 | 2782712..2783608 | + | 897 | WP_182072464.1 | benzoate transporter | - |
| - | 2783800..2783944 | + | 145 | - | - | Antitoxin |
| - | 2783806..2783909 | - | 104 | - | - | Toxin |
| R2TS_RS13370 | 2784048..2784386 | - | 339 | WP_033145840.1 | YebY family protein | - |
| R2TS_RS13375 | 2784403..2785272 | - | 870 | WP_048979917.1 | copper homeostasis membrane protein CopD | - |
| R2TS_RS13380 | 2785274..2785645 | - | 372 | WP_182072466.1 | CopC domain-containing protein YobA | - |
| R2TS_RS13385 | 2785782..2786012 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| R2TS_RS13390 | 2786123..2786773 | + | 651 | WP_047061090.1 | carbon-nitrogen hydrolase family protein | - |
| R2TS_RS13395 | 2786798..2787460 | + | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T38484 NZ_AP024498:c2783909-2783806 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT38484 NZ_AP024498:2783800-2783944 [Enterobacter asburiae]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
