Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2058290..2058561 | Replicon | chromosome |
| Accession | NZ_AP023226 | ||
| Organism | Escherichia coli strain YJ3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2058420..2058523 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2058290..2058561 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXS63_RS09830 | 2054845..2055507 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HXS63_RS09835 | 2055531..2056187 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HXS63_RS09840 | 2056289..2056519 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HXS63_RS09845 | 2056658..2057032 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HXS63_RS09850 | 2057036..2057908 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| HXS63_RS09855 | 2057921..2058262 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2058290..2058561 | - | 272 | - | - | Antitoxin |
| - | 2058420..2058523 | + | 104 | - | - | Toxin |
| HXS63_RS09860 | 2058658..2059314 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| HXS63_RS09865 | 2059315..2059506 | - | 192 | WP_000457842.1 | YebW family protein | - |
| HXS63_RS09870 | 2059611..2059847 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HXS63_RS09875 | 2059965..2061404 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T36960 NZ_AP023226:2058420-2058523 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT36960 NZ_AP023226:c2058561-2058290 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
