Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) /Acetyltransf_4(toxin)
Location 630977..632394 Replicon chromosome
Accession NZ_AP023081
Organism Pseudomonas solani strain Sm006

Toxin (Protein)


Gene name - Uniprot ID -
Locus tag PSm6_RS02950 Protein ID WP_265169499.1
Coordinates 631825..632394 (-) Length 190 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID -
Locus tag PSm6_RS02945 Protein ID WP_265169498.1
Coordinates 630977..631822 (-) Length 282 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PSm6_RS02920 (PSm6_05850) 626392..627339 + 948 WP_021221382.1 bile acid:sodium symporter family protein -
PSm6_RS02925 (PSm6_05860) 627487..627801 + 315 WP_021221383.1 quaternary ammonium compound efflux SMR transporter SugE -
PSm6_RS02930 (PSm6_05870) 627871..629745 - 1875 WP_021221384.1 MFS transporter -
PSm6_RS02935 (PSm6_05880) 629898..630227 - 330 WP_021221385.1 AzlD domain-containing protein -
PSm6_RS02940 (PSm6_05890) 630227..630940 - 714 WP_043243090.1 AzlC family ABC transporter permease -
PSm6_RS02945 (PSm6_05900) 630977..631822 - 846 WP_265169498.1 AraC family transcriptional regulator Antitoxin
PSm6_RS02950 (PSm6_05910) 631825..632394 - 570 WP_265169499.1 GNAT family protein Toxin
PSm6_RS02955 (PSm6_05920) 632646..636122 + 3477 WP_184487762.1 NahK/ErcS family hybrid sensor histidine kinase/response regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

GNAT domain

(14-146)

Antitoxin

AraC-type arabinose-binding/dimerisation domain

(18-139)


Sequences

Toxin        


Download         Length: 190 a.a.        Molecular weight: 21273.35 Da        Isoelectric Point: 9.4541

>T36728 WP_265169499.1 NZ_AP023081:c632394-631825 [Pseudomonas solani]
MFNPQPVILQRGALRLEPLTEADITELSALAEANRDELVYMSGPLRPDWYRQGLAQQREGLAVVFAIRLGDRLVGTSRFA
DFMPALPAVEIGWTWLARSEHASGLNASIKYLMLRHAFEEWQVVRVQLKTAGSNLRSQKAIEKLGAQREGVLRNNRRLAD
GRLDDSVLYSITDREWPAVKKALEASFGN

Download         Length: 570 bp

>T36728 NZ_AP023081:c632394-631825 [Pseudomonas solani]
ATGTTCAATCCGCAACCGGTCATCCTGCAGCGTGGCGCCTTGCGCCTGGAACCGCTGACTGAGGCCGACATCACCGAGCT
CTCGGCCCTCGCTGAAGCCAACCGCGACGAGCTGGTCTACATGAGCGGCCCGCTGCGCCCGGACTGGTACCGCCAGGGCC
TGGCCCAGCAGCGCGAAGGCCTGGCCGTGGTGTTCGCCATCCGCCTGGGCGACCGCCTGGTGGGCACCAGCCGTTTCGCG
GATTTCATGCCTGCCCTGCCGGCGGTGGAGATCGGCTGGACCTGGCTGGCCCGCAGCGAGCATGCCAGTGGCCTCAATGC
TTCGATCAAATACCTGATGCTGCGCCACGCCTTCGAGGAGTGGCAGGTGGTGCGTGTGCAACTGAAGACCGCGGGCAGCA
ACCTGCGCTCGCAGAAGGCCATCGAGAAGCTCGGTGCACAGCGCGAAGGGGTGCTGCGCAACAACCGCCGCCTGGCCGAT
GGGCGCCTCGACGACAGCGTGCTCTACAGCATCACCGACCGTGAATGGCCGGCGGTGAAGAAGGCCCTGGAAGCTTCCTT
CGGCAACTGA

Antitoxin


Download         Length: 282 a.a.        Molecular weight: 31491.63 Da        Isoelectric Point: 7.2143

>AT36728 WP_265169498.1 NZ_AP023081:c631822-630977 [Pseudomonas solani]
MSGIGGEQTHFWQASELGGVELLHARYIEQRFAPHVHEGYVFTVIESGAQRFRHRGSDHLAEQGSMVLINPDELHTGSKA
HEEGWRYRGFYPDLQRVTEVLEELDISTGGLPTFADSVLHDPEVTNRFLALHRLLEQGATALEQQMAWREAVLLLFQRYA
RIGTPRAAGHEPQAVTLARELLASRLAEPPSLEELAAAVGLSPFHFARVFRRATGLPPHSWLKQRRLEQARALLREGCAP
LSVAMQLGFADQSHLSRQFKQAYGVAPGEYRSACARSFKTH

Download         Length: 846 bp

>AT36728 NZ_AP023081:c631822-630977 [Pseudomonas solani]
ATGAGTGGCATCGGCGGCGAACAGACGCATTTCTGGCAGGCCAGCGAGCTCGGCGGTGTCGAGTTGCTGCATGCGCGCTA
CATCGAGCAGCGCTTCGCGCCCCATGTGCACGAGGGCTATGTCTTCACCGTGATCGAGTCCGGCGCCCAGCGTTTCCGTC
ATCGTGGCAGCGACCACCTGGCGGAGCAGGGCAGCATGGTGCTGATCAACCCCGACGAACTCCACACCGGCTCCAAGGCC
CACGAGGAAGGCTGGCGCTATCGCGGTTTCTACCCCGACCTGCAGCGGGTGACCGAGGTGCTGGAGGAGCTGGATATCTC
CACGGGCGGCCTGCCCACCTTTGCTGACAGCGTGCTGCACGACCCCGAGGTGACCAACCGCTTCCTCGCCCTGCACCGTT
TGCTGGAGCAGGGCGCCACGGCGCTGGAGCAGCAGATGGCCTGGCGCGAAGCGGTGCTGCTGCTGTTTCAACGCTACGCA
CGCATCGGCACGCCCCGTGCCGCCGGGCATGAGCCCCAGGCGGTGACCCTTGCCCGCGAGCTGTTGGCTTCGCGCCTGGC
CGAACCGCCGTCCCTGGAGGAACTGGCCGCAGCGGTGGGGCTCTCGCCCTTCCACTTCGCCCGGGTGTTCCGCCGGGCCA
CCGGGTTGCCGCCACATTCCTGGCTCAAGCAGCGTCGCCTGGAGCAGGCGCGGGCATTGCTGCGCGAGGGCTGCGCGCCG
CTGTCGGTGGCCATGCAATTGGGCTTCGCCGACCAGAGCCATTTGAGCCGGCAGTTCAAGCAGGCCTATGGCGTGGCGCC
GGGCGAATACCGCAGCGCCTGCGCAAGATCGTTCAAGACTCACTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References