Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2319339..2319610 Replicon chromosome
Accession NZ_AP022815
Organism Escherichia coli strain JE86-ST05

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2319377..2319480 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2319339..2319610 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JL003_RS11800 2316496..2317935 + 1440 WP_024235159.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
JL003_RS11805 2318053..2318289 + 237 WP_001295499.1 DUF1480 family protein -
JL003_RS11810 2318394..2318585 + 192 WP_000457842.1 YebW family protein -
JL003_RS11815 2318586..2319242 - 657 WP_021565248.1 protein-serine/threonine phosphatase -
- 2319339..2319610 + 272 - - Antitoxin
- 2319377..2319480 - 104 - - Toxin
JL003_RS11820 2319638..2319979 - 342 WP_000976492.1 YebY family protein -
JL003_RS11825 2319992..2320864 - 873 WP_000879280.1 copper homeostasis membrane protein CopD -
JL003_RS11830 2320868..2321242 - 375 WP_000204699.1 CopC domain-containing protein YobA -
JL003_RS11835 2321381..2321611 + 231 WP_000916763.1 DNA polymerase III subunit theta -
JL003_RS11840 2321713..2322369 + 657 WP_000011658.1 carbon-nitrogen hydrolase family protein -
JL003_RS11845 2322393..2323055 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T36522 NZ_AP022815:c2319480-2319377 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT36522 NZ_AP022815:2319339-2319610 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References