Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 964434..964705 | Replicon | chromosome |
| Accession | NZ_AP021896 | ||
| Organism | Escherichia coli strain 2018-02-2CC | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 964472..964575 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 964434..964705 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRR25_RS04650 | 961591..963030 | + | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HRR25_RS04655 | 963148..963384 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| HRR25_RS04660 | 963489..963680 | + | 192 | WP_001338167.1 | YebW family protein | - |
| HRR25_RS04665 | 963681..964337 | - | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| - | 964434..964705 | + | 272 | - | - | Antitoxin |
| - | 964472..964575 | - | 104 | - | - | Toxin |
| HRR25_RS04670 | 964733..965074 | - | 342 | WP_000976472.1 | YebY family protein | - |
| HRR25_RS04675 | 965087..965959 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| HRR25_RS04680 | 965963..966337 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HRR25_RS04685 | 966476..966706 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HRR25_RS04690 | 966808..967464 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HRR25_RS04695 | 967488..968150 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 956204..989412 | 33208 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T33654 NZ_AP021896:c964575-964472 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT33654 NZ_AP021896:964434-964705 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
