Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2159930..2160073 | Replicon | chromosome |
| Accession | NZ_OW969904 | ||
| Organism | Citrobacter freundii isolate 0 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2159965..2160068 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2159930..2160073 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ142_RS10605 | 2156377..2157039 | - | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
| LQ142_RS10610 | 2157063..2157719 | - | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| LQ142_RS10615 | 2157826..2158056 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| LQ142_RS10620 | 2158200..2158574 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| LQ142_RS10625 | 2158578..2159450 | + | 873 | WP_032935389.1 | copper homeostasis membrane protein CopD | - |
| LQ142_RS10630 | 2159471..2159809 | + | 339 | WP_003034934.1 | YebY family protein | - |
| - | 2159930..2160073 | - | 144 | - | - | Antitoxin |
| - | 2159965..2160068 | + | 104 | - | - | Toxin |
| LQ142_RS10635 | 2160215..2160856 | + | 642 | WP_016150398.1 | protein-serine/threonine phosphatase | - |
| LQ142_RS10640 | 2160857..2161048 | - | 192 | WP_003034941.1 | YebW family protein | - |
| LQ142_RS10645 | 2161151..2161387 | - | 237 | WP_029139506.1 | YebV family protein | - |
| LQ142_RS10650 | 2161488..2162876 | - | 1389 | WP_199991613.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T296199 NZ_OW969904:2159965-2160068 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT296199 NZ_OW969904:c2160073-2159930 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
