Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2053620..2053888 | Replicon | chromosome |
| Accession | NZ_OW967795 | ||
| Organism | Escherichia coli isolate 538 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2053748..2053850 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2053620..2053888 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ148_RS09710 | 2050173..2050835 | - | 663 | WP_000944249.1 | exodeoxyribonuclease X | - |
| LQ148_RS09715 | 2050859..2051515 | - | 657 | WP_022296549.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LQ148_RS09720 | 2051617..2051847 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LQ148_RS09725 | 2051986..2052360 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| LQ148_RS09730 | 2052364..2053236 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| LQ148_RS09735 | 2053249..2053590 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2053620..2053888 | - | 269 | - | - | Antitoxin |
| - | 2053748..2053850 | + | 103 | - | - | Toxin |
| LQ148_RS09740 | 2053985..2054641 | + | 657 | WP_230158849.1 | protein-serine/threonine phosphatase | - |
| LQ148_RS09745 | 2054642..2054833 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LQ148_RS09750 | 2054938..2055174 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LQ148_RS09755 | 2055291..2056730 | - | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T295831 NZ_OW967795:2053748-2053850 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT295831 NZ_OW967795:c2053888-2053620 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
