Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2757566..2757709 | Replicon | chromosome |
| Accession | NZ_OU943338 | ||
| Organism | Salmonella enterica subsp. enterica serovar Typhi strain MDUST348 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2757568..2757670 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2757566..2757709 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AFF66_RS13835 (SAMEA2158835_02766) | 2754844..2755974 | + | 1131 | WP_000529513.1 | GGDEF domain-containing protein | - |
| AFF66_RS13840 | 2756260..2756655 | - | 396 | Protein_2710 | DUF977 family protein | - |
| AFF66_RS13845 | 2756668..2756778 | - | 111 | Protein_2711 | replication protein | - |
| AFF66_RS13850 | 2756779..2757140 | + | 362 | Protein_2712 | recombinase RecT | - |
| AFF66_RS13855 (SAMEA2158835_02768) | 2757139..2757447 | + | 309 | Protein_2713 | tyrosine-type recombinase/integrase | - |
| - | 2757566..2757709 | + | 144 | - | - | Antitoxin |
| - | 2757568..2757670 | - | 103 | - | - | Toxin |
| AFF66_RS13860 (SAMEA2158835_02769) | 2757811..2758164 | - | 354 | WP_000722366.1 | YebY family protein | - |
| AFF66_RS13865 (SAMEA2158835_02770) | 2758181..2759056 | - | 876 | WP_000979693.1 | copper homeostasis membrane protein CopD | - |
| AFF66_RS13870 (SAMEA2158835_02771) | 2759057..2759431 | - | 375 | WP_001681742.1 | CopC domain-containing protein YobA | - |
| AFF66_RS13875 (SAMEA2158835_02772) | 2759569..2759799 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| AFF66_RS13880 (SAMEA2158835_02773) | 2759907..2760563 | + | 657 | WP_000100250.1 | carbon-nitrogen hydrolase family protein | - |
| AFF66_RS13885 (SAMEA2158835_02774) | 2760587..2761285 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 2726379..2763373 | 36994 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T294940 NZ_OU943338:c2757670-2757568 [Salmonella enterica subsp. enterica serovar Typhi]
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT294940 NZ_OU943338:2757566-2757709 [Salmonella enterica subsp. enterica serovar Typhi]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
