Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1974554..1974697 | Replicon | chromosome |
| Accession | NZ_OU943337 | ||
| Organism | Salmonella enterica subsp. enterica serovar Typhi strain MDUST255 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1974593..1974695 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1974554..1974697 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AE465_RS09520 (SAMEA2145578_01932) | 1970978..1971676 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| AE465_RS09525 (SAMEA2145578_01933) | 1971700..1972356 | - | 657 | WP_000100250.1 | carbon-nitrogen hydrolase family protein | - |
| AE465_RS09530 (SAMEA2145578_01934) | 1972464..1972694 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| AE465_RS09535 (SAMEA2145578_01935) | 1972832..1973206 | + | 375 | WP_001681742.1 | CopC domain-containing protein YobA | - |
| AE465_RS09540 (SAMEA2145578_01936) | 1973207..1974082 | + | 876 | WP_000979693.1 | copper homeostasis membrane protein CopD | - |
| AE465_RS09545 (SAMEA2145578_01937) | 1974099..1974452 | + | 354 | WP_000722366.1 | YebY family protein | - |
| - | 1974554..1974697 | - | 144 | - | - | Antitoxin |
| - | 1974593..1974695 | + | 103 | - | - | Toxin |
| AE465_RS09550 (SAMEA2145578_01938) | 1974816..1975124 | - | 309 | Protein_1866 | tyrosine-type recombinase/integrase | - |
| AE465_RS09555 | 1975123..1975484 | - | 362 | Protein_1867 | recombinase RecT | - |
| AE465_RS09560 | 1975485..1975595 | + | 111 | Protein_1868 | replication protein | - |
| AE465_RS09565 | 1975608..1976003 | + | 396 | Protein_1869 | DUF977 family protein | - |
| AE465_RS09570 (SAMEA2145578_01940) | 1976289..1977419 | - | 1131 | WP_000529513.1 | GGDEF domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 1952681..2005884 | 53203 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T294924 NZ_OU943337:1974593-1974695 [Salmonella enterica subsp. enterica serovar Typhi]
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT294924 NZ_OU943337:c1974697-1974554 [Salmonella enterica subsp. enterica serovar Typhi]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
