Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RHH(antitoxin)
Location 433501..434048 Replicon chromosome
Accession NZ_LT963391
Organism Pseudomonas syringae pv. cerasicola isolate CFBP6109

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag C6H44_RS02155 Protein ID WP_057459291.1
Coordinates 433501..433776 (-) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag C6H44_RS02160 Protein ID WP_057459292.1
Coordinates 433776..434048 (-) Length 91 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C6H44_RS02140 430663..430944 + 282 WP_060411106.1 hypothetical protein -
C6H44_RS02145 430925..432154 + 1230 WP_104725402.1 IS91 family transposase -
C6H44_RS02150 432335..433336 - 1002 Protein_388 IS110-like element ISPsy16 family transposase -
C6H44_RS02155 433501..433776 - 276 WP_057459291.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
C6H44_RS02160 433776..434048 - 273 WP_057459292.1 ribbon-helix-helix domain-containing protein Antitoxin
C6H44_RS02165 434070..434807 - 738 WP_057459293.1 DUF2807 domain-containing protein -
C6H44_RS02170 434906..435016 + 111 WP_081681992.1 SPOR domain-containing protein -
C6H44_RS02175 435143..435826 + 684 Protein_393 IS110-like element ISPsy16 family transposase -
C6H44_RS02180 435973..436950 - 978 WP_032701292.1 IS5 family transposase -
C6H44_RS02185 437239..437841 - 603 WP_016982183.1 adenylyl-sulfate kinase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside IScluster/Tn - - 430946..436950 6004


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-90)

Antitoxin

Ribbon-helix-helix protein, CopG

(10-47)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10781.31 Da        Isoelectric Point: 7.0128

>T293892 WP_057459291.1 NZ_LT963391:c433776-433501 [Pseudomonas syringae pv. cerasicola]
MELKWTSKALSDITRLYEFLASVNQPAAARTVQQLTAAPTTLLTNPRIGERLEEFEPRDVRRIQIGQYEMRYELVDSTIY
LLRLWHTREDR

Download         Length: 276 bp

Antitoxin


Download         Length: 91 a.a.        Molecular weight: 10006.26 Da        Isoelectric Point: 5.1007

>AT293892 WP_057459292.1 NZ_LT963391:c434048-433776 [Pseudomonas syringae pv. cerasicola]
MATTAKTRSVTAHVPEQLAQKVDLMAERLERSKNWIVKQALSAWIDQEEERSRLTREALADVDAGRVIDHQAVQAWADSL
STDTPLPVPG

Download         Length: 273 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References