Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1987190..1987461 | Replicon | chromosome |
| Accession | NZ_LT906474 | ||
| Organism | Escherichia coli strain NCTC122 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1987320..1987423 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1987190..1987461 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CKV98_RS09970 | 1983745..1984407 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| CKV98_RS09975 | 1984431..1985087 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CKV98_RS09980 | 1985189..1985419 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CKV98_RS09985 | 1985558..1985932 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CKV98_RS09990 | 1985936..1986808 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| CKV98_RS09995 | 1986821..1987162 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1987190..1987461 | - | 272 | - | - | Antitoxin |
| - | 1987320..1987423 | + | 104 | - | - | Toxin |
| CKV98_RS10000 | 1987558..1988214 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| CKV98_RS10005 | 1988215..1988406 | - | 192 | WP_001338167.1 | YebW family protein | - |
| CKV98_RS10010 | 1988511..1988747 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| CKV98_RS10015 | 1988865..1990304 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T293749 NZ_LT906474:1987320-1987423 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT293749 NZ_LT906474:c1987461-1987190 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
