Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1960800..1961071 | Replicon | chromosome |
| Accession | NZ_LT883142 | ||
| Organism | Escherichia coli isolate 6666666.257727.embl | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1960930..1961033 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1960800..1961071 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EC1094V2_RS11605 | 1957355..1958017 | - | 663 | WP_096321576.1 | exodeoxyribonuclease X | - |
| EC1094V2_RS11610 | 1958041..1958697 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| EC1094V2_RS11615 | 1958799..1959029 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EC1094V2_RS11620 | 1959168..1959542 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EC1094V2_RS11625 | 1959546..1960418 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| EC1094V2_RS11630 | 1960431..1960772 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1960800..1961071 | - | 272 | - | - | Antitoxin |
| - | 1960930..1961033 | + | 104 | - | - | Toxin |
| EC1094V2_RS11635 | 1961168..1961824 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| EC1094V2_RS11640 | 1961825..1962016 | - | 192 | WP_001296140.1 | YebW family protein | - |
| EC1094V2_RS11645 | 1962121..1962357 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EC1094V2_RS11650 | 1962475..1963914 | - | 1440 | WP_024174420.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T293595 NZ_LT883142:1960930-1961033 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT293595 NZ_LT883142:c1961071-1960800 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
