Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2110795..2111066 | Replicon | chromosome |
| Accession | NZ_LS992166 | ||
| Organism | Escherichia coli isolate Escherichia coli str. TO6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2110925..2111028 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2110795..2111066 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECTO6_RS10345 | 2107350..2108012 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| ECTO6_RS10350 | 2108036..2108692 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| ECTO6_RS10355 | 2108794..2109024 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECTO6_RS10360 | 2109163..2109537 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ECTO6_RS10365 | 2109541..2110413 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| ECTO6_RS10370 | 2110426..2110767 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2110795..2111066 | - | 272 | - | - | Antitoxin |
| - | 2110925..2111028 | + | 104 | - | - | Toxin |
| ECTO6_RS10375 | 2111163..2111819 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| ECTO6_RS10380 | 2111820..2112011 | - | 192 | WP_000457842.1 | YebW family protein | - |
| ECTO6_RS10385 | 2112116..2112352 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECTO6_RS10390 | 2112470..2113909 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T292709 NZ_LS992166:2110925-2111028 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT292709 NZ_LS992166:c2111066-2110795 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
