Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/Phd(antitoxin)
Location 65991..66535 Replicon chromosome
Accession NZ_LR994544
Organism Xanthomonas euroxanthea isolate X. euroxanthea CPBF 424

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag XTG_RS00240 Protein ID WP_104585946.1
Coordinates 66236..66535 (+) Length 100 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag XTG_RS00235 Protein ID WP_104585948.1
Coordinates 65991..66248 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
XTG_RS00225 62592..65087 - 2496 WP_166766693.1 DEAD/DEAH box helicase -
XTG_RS00230 65261..65923 + 663 WP_104585950.1 hemolysin III family protein -
XTG_RS00235 65991..66248 + 258 WP_104585948.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
XTG_RS00240 66236..66535 + 300 WP_104585946.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
XTG_RS00245 66549..67079 - 531 WP_115675524.1 hypothetical protein -
XTG_RS00250 67264..68349 - 1086 WP_115676443.1 hypothetical protein -
XTG_RS00255 68707..69351 + 645 WP_115675525.1 glutathione S-transferase family protein -
XTG_RS00260 69490..70197 + 708 WP_115675526.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-90)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11316.00 Da        Isoelectric Point: 9.0380

>T292097 WP_104585946.1 NZ_LR994544:66236-66535 [Xanthomonas euroxanthea]
MAEIVWSEPAVADLDAIADYIALEDAAAAAALVRRVVAHVEQLAEHPESGSRPQELKRSRYRQIVEPPCRVFYRVDGQRV
VVVHVMRSERLLRRNRLSR

Download         Length: 300 bp

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9716.22 Da        Isoelectric Point: 8.6056

>AT292097 WP_104585948.1 NZ_LR994544:65991-66248 [Xanthomonas euroxanthea]
MRTELVTTLKRQATELLADVERDKEPILITQHGLPSAYLVDVTSYERLQQRMAILEGIARGEMAVAEGRSLSHEQAKQRL
ARWLK

Download         Length: 258 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References