Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2161935..2162206 | Replicon | chromosome |
| Accession | NZ_LR890651 | ||
| Organism | Escherichia coli isolate MINF_2E-sc-2280463 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2162065..2162168 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2161935..2162206 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW95_RS10630 | 2158490..2159152 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JMW95_RS10635 | 2159176..2159832 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| JMW95_RS10640 | 2159934..2160164 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JMW95_RS10645 | 2160303..2160677 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| JMW95_RS10650 | 2160681..2161553 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| JMW95_RS10655 | 2161566..2161907 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2161935..2162206 | - | 272 | - | - | Antitoxin |
| - | 2162065..2162168 | + | 104 | - | - | Toxin |
| JMW95_RS10660 | 2162303..2162959 | + | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| JMW95_RS10665 | 2162960..2163151 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JMW95_RS10670 | 2163256..2163492 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JMW95_RS10675 | 2163610..2165049 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T291713 NZ_LR890651:2162065-2162168 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT291713 NZ_LR890651:c2162206-2161935 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
