Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | stbDE/ParE-YafN |
Location | 78943..79465 | Replicon | plasmid 3 |
Accession | NZ_LR890642 | ||
Organism | Klebsiella pneumoniae isolate INF344-sc-2280162 |
Toxin (Protein)
Gene name | stbE | Uniprot ID | A0A9J6S4Z8 |
Locus tag | JMW76_RS26345 | Protein ID | WP_004187019.1 |
Coordinates | 79181..79465 (+) | Length | 95 a.a. |
Antitoxin (Protein)
Gene name | stbD | Uniprot ID | A0A2J4ZSR4 |
Locus tag | JMW76_RS26340 | Protein ID | WP_004187025.1 |
Coordinates | 78943..79191 (+) | Length | 83 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
JMW76_RS26310 | 76310..76879 | - | 570 | WP_004152117.1 | small heat shock protein sHSP20 | - |
JMW76_RS26315 | 76914..77195 | - | 282 | WP_013307885.1 | helix-turn-helix domain-containing protein | - |
JMW76_RS26320 | 77439..77702 | - | 264 | WP_004118208.1 | hypothetical protein | - |
JMW76_RS26325 | 77717..77980 | + | 264 | WP_004187027.1 | transposase | - |
JMW76_RS26330 | 77925..78041 | + | 117 | Protein_76 | transposase domain-containing protein | - |
JMW76_RS26335 | 78229..78653 | + | 425 | Protein_77 | IS1 family transposase | - |
JMW76_RS26340 | 78943..79191 | + | 249 | WP_004187025.1 | plasmid stabilization protein | Antitoxin |
JMW76_RS26345 | 79181..79465 | + | 285 | WP_004187019.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
JMW76_RS26350 | 79481..80836 | - | 1356 | WP_004187017.1 | ISNCY family transposase | - |
JMW76_RS26355 | 80918..81217 | - | 300 | Protein_81 | conjugal transfer protein TraH | - |
JMW76_RS26360 | 81215..81698 | - | 484 | Protein_82 | hypothetical protein | - |
JMW76_RS26365 | 81715..82239 | - | 525 | Protein_83 | hypothetical protein | - |
JMW76_RS26370 | 83782..84246 | + | 465 | WP_004187010.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Non-Mobilizable plasmid | - | mrkA / mrkB / mrkC / mrkF / mrkJ | 1..134665 | 134665 | |
- | flank | IS/Tn | - | - | 78423..78689 | 266 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|