Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3607864..3608009 | Replicon | chromosome |
| Accession | NZ_LR890471 | ||
| Organism | Klebsiella pneumoniae isolate INF168-sc-2280023 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3607871..3607973 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3607864..3608009 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMX14_RS17560 | 3603396..3604829 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JMX14_RS17565 | 3604945..3605184 | + | 240 | WP_002911393.1 | YebV family protein | - |
| JMX14_RS17570 | 3605282..3605473 | + | 192 | WP_002911395.1 | YebW family protein | - |
| JMX14_RS17575 | 3605470..3606123 | - | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| JMX14_RS17580 | 3606280..3607248 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| JMX14_RS17585 | 3607353..3607496 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3607864..3608009 | + | 146 | - | - | Antitoxin |
| - | 3607871..3607973 | - | 103 | - | - | Toxin |
| JMX14_RS17590 | 3608132..3608470 | - | 339 | WP_002911404.1 | YebY family protein | - |
| JMX14_RS17595 | 3608487..3609356 | - | 870 | WP_201519884.1 | copper homeostasis membrane protein CopD | - |
| JMX14_RS17600 | 3609360..3609734 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMX14_RS17605 | 3609847..3610077 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMX14_RS17610 | 3610156..3610815 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMX14_RS17615 | 3610819..3612879 | - | 2061 | WP_004148850.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T291126 NZ_LR890471:c3607973-3607871 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT291126 NZ_LR890471:3607864-3608009 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
