Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2176027..2176295 | Replicon | chromosome |
| Accession | NZ_LR890349 | ||
| Organism | Escherichia coli isolate MSB1_9D-sc-2280338 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2176154..2176257 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2176027..2176295 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW03_RS10485 | 2172580..2173242 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JMW03_RS10490 | 2173266..2173922 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| JMW03_RS10495 | 2174024..2174254 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JMW03_RS10500 | 2174393..2174767 | + | 375 | WP_000168739.1 | CopC domain-containing protein YobA | - |
| JMW03_RS10505 | 2174771..2175643 | + | 873 | WP_000879277.1 | copper homeostasis membrane protein CopD | - |
| JMW03_RS10510 | 2175656..2175997 | + | 342 | WP_001515445.1 | YebY family protein | - |
| - | 2176027..2176295 | - | 269 | - | - | Antitoxin |
| - | 2176154..2176257 | + | 104 | - | - | Toxin |
| JMW03_RS10515 | 2176422..2177048 | + | 627 | WP_201514512.1 | protein-serine/threonine phosphatase | - |
| JMW03_RS10520 | 2177049..2177240 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JMW03_RS10525 | 2177345..2177581 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JMW03_RS10530 | 2177699..2179138 | - | 1440 | WP_201514471.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T290737 NZ_LR890349:2176154-2176257 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT290737 NZ_LR890349:c2176295-2176027 [Escherichia coli]
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
