Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1842525..1842670 | Replicon | chromosome |
| Accession | NZ_LR890317 | ||
| Organism | Klebsiella pneumoniae isolate INF215-sc-2280087 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1842561..1842663 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1842525..1842670 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMX39_RS09010 | 1837655..1839715 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JMX39_RS09015 | 1839719..1840378 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMX39_RS09020 | 1840457..1840687 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMX39_RS09025 | 1840800..1841174 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMX39_RS09030 | 1841178..1842047 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| JMX39_RS09035 | 1842064..1842402 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1842525..1842670 | - | 146 | - | - | Antitoxin |
| - | 1842561..1842663 | + | 103 | - | - | Toxin |
| JMX39_RS09040 | 1843039..1843182 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JMX39_RS09045 | 1843287..1844255 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JMX39_RS09050 | 1844412..1845065 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| JMX39_RS09055 | 1845062..1845253 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMX39_RS09060 | 1845351..1845590 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JMX39_RS09065 | 1845706..1847139 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T290616 NZ_LR890317:1842561-1842663 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT290616 NZ_LR890317:c1842670-1842525 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
