Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2066155..2066426 | Replicon | chromosome |
| Accession | NZ_LR890288 | ||
| Organism | Escherichia coli isolate MSB1_1A-sc-2280383 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2066285..2066388 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2066155..2066426 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW08_RS09800 | 2062710..2063372 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JMW08_RS09805 | 2063396..2064052 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| JMW08_RS09810 | 2064154..2064384 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JMW08_RS09815 | 2064523..2064897 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JMW08_RS09820 | 2064901..2065773 | + | 873 | WP_042346164.1 | copper homeostasis membrane protein CopD | - |
| JMW08_RS09825 | 2065786..2066127 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2066155..2066426 | - | 272 | - | - | Antitoxin |
| - | 2066285..2066388 | + | 104 | - | - | Toxin |
| JMW08_RS09830 | 2066523..2067179 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| JMW08_RS09835 | 2067180..2067371 | - | 192 | WP_000457842.1 | YebW family protein | - |
| JMW08_RS09840 | 2067476..2067712 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JMW08_RS09845 | 2067830..2069269 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T290500 NZ_LR890288:2066285-2066388 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT290500 NZ_LR890288:c2066426-2066155 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
