Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2215299..2215570 | Replicon | chromosome |
| Accession | NZ_LR882997 | ||
| Organism | Escherichia coli isolate L3_E36_ETEC | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2215429..2215532 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2215299..2215570 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JL022_RS10890 | 2211854..2212516 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JL022_RS10895 | 2212540..2213196 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| JL022_RS10900 | 2213298..2213528 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JL022_RS10905 | 2213667..2214041 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JL022_RS10910 | 2214045..2214917 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| JL022_RS10915 | 2214930..2215271 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2215299..2215570 | - | 272 | - | - | Antitoxin |
| - | 2215429..2215532 | + | 104 | - | - | Toxin |
| JL022_RS10920 | 2215667..2216323 | + | 657 | WP_000812723.1 | protein-serine/threonine phosphatase | - |
| JL022_RS10925 | 2216324..2216515 | - | 192 | WP_001338167.1 | YebW family protein | - |
| JL022_RS10930 | 2216620..2216856 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JL022_RS10935 | 2216974..2218413 | - | 1440 | WP_001352399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2138557..2231410 | 92853 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T290066 NZ_LR882997:2215429-2215532 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT290066 NZ_LR882997:c2215570-2215299 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
