Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) /BrnT(toxin)
Location 2162114..2162591 Replicon chromosome
Accession NZ_LR882934
Organism Planktothrix agardhii strain NIVA-CYA126/8

Toxin (Protein)


Gene name - Uniprot ID A0A1J1JEC9
Locus tag NMK38_RS09910 Protein ID WP_042155864.1
Coordinates 2162319..2162591 (-) Length 91 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID A0A1J1JHM1
Locus tag NMK38_RS09905 Protein ID WP_042155865.1
Coordinates 2162114..2162338 (-) Length 75 a.a.

Genomic Context

NMK38_RS09915NMK38_RS09925NMK38_RS09870NMK38_RS09875NMK38_RS09880NMK38_RS09885NMK38_RS09890NMK38_RS09895NMK38_RS09900NMK38_RS09905NMK38_RS09910NMK38_RS09920
Location: 2162915..2163079 (165 bp)
Type: Others
Protein ID: WP_235751907.1
Location: 2163755..2166313 (2559 bp)
Type: Others
Protein ID: WP_227351113.1
Location: 2157467..2157943 (477 bp)
Type: Others
Protein ID: WP_042155870.1
Location: 2157946..2159103 (1158 bp)
Type: Others
Protein ID: WP_042155869.1
Location: 2159249..2159641 (393 bp)
Type: Others
Protein ID: WP_026786219.1
Location: 2159613..2160017 (405 bp)
Type: Others
Protein ID: WP_042155868.1
Location: 2160127..2160264 (138 bp)
Type: Others
Protein ID: WP_071783091.1
Location: 2160381..2160890 (510 bp)
Type: Others
Protein ID: WP_026797999.1
Location: 2161038..2161682 (645 bp)
Type: Others
Protein ID: WP_042155867.1
Location: 2162114..2162338 (225 bp)
Type: Antitoxin
Protein ID: WP_042155865.1
Location: 2162319..2162591 (273 bp)
Type: Toxin
Protein ID: WP_042155864.1
Location: 2163265..2163483 (219 bp)
Type: Others
Protein ID: Protein_1951
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
NMK38_RS09870 (NIVACYA_01969)2157467..2157943-477WP_042155870.1R3H domain-containing nucleic acid-binding protein-
NMK38_RS09875 (NIVACYA_01970)2157946..2159103-1158WP_042155869.1membrane protein insertase YidC-
NMK38_RS09880 (NIVACYA_01971)2159249..2159641-393WP_026786219.1PH domain-containing protein-
NMK38_RS09885 (NIVACYA_01972)2159613..2160017-405WP_042155868.1ribonuclease P protein component-
NMK38_RS09890 (NIVACYA_01973)2160127..2160264-138WP_071783091.150S ribosomal protein L34-
NMK38_RS09895 (NIVACYA_01974)2160381..2160890-510WP_026797999.1DUF2808 domain-containing protein-
NMK38_RS09900 (NIVACYA_01975)2161038..2161682-645WP_042155867.1Uma2 family endonuclease-
NMK38_RS09905 (NIVACYA_01977)2162114..2162338-225WP_042155865.1CopG family antitoxinAntitoxin
NMK38_RS09910 (NIVACYA_01978)2162319..2162591-273WP_042155864.1BrnT family toxinToxin
NMK38_RS099152162915..2163079+165WP_235751907.1hypothetical protein-
NMK38_RS099202163265..2163483-219Protein_1951IS701 family transposase-
NMK38_RS09925 (NIVACYA_01980)2163755..2166313+2559WP_227351113.1phosphoenolpyruvate--protein phosphotransferase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Ribonuclease toxin, BrnT, of type II toxin-antitoxin system

(6-81)

Antitoxin

CopG antitoxin

(3-68)


Sequences

Toxin        


Download         Length: 91 a.a.        Molecular weight: 10918.26 Da        Isoelectric Point: 7.2018

>T289961 WP_042155864.1 NZ_LR882934:c2162591-2162319 [Planktothrix agardhii]
MYSFEYDDNKSRTNQQKHGIDFIEAQQLWQDDDLLEIQATSETESRFLAIGKLKQKHWTAVITYRLENIRIISVRRSRPN
EVIWYESRRI

Download         Length: 273 bp

Antitoxin


Download         Length: 75 a.a.        Molecular weight: 8689.84 Da        Isoelectric Point: 4.4633

>AT289961 WP_042155865.1 NZ_LR882934:c2162338-2162114 [Planktothrix agardhii]
MKAEEFDAKFDTGEDLTEFMDFSTARRPNREKQKIELNLPLWMIRQLEAEAQKQGISPQTFLENYLAENLAPVR

Download         Length: 225 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
AlphaFold DBA0A1J1JEC9

Antitoxin

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Source
ID
Structure
AlphaFold DBA0A1J1JHM1

References