Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2578213..2578484 | Replicon | chromosome |
| Accession | NZ_LR882493 | ||
| Organism | Escherichia coli isolate 2016-17-292 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2578251..2578354 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2578213..2578484 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IHO92_RS12650 | 2575370..2576809 | + | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IHO92_RS12655 | 2576927..2577163 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IHO92_RS12660 | 2577268..2577459 | + | 192 | WP_001296140.1 | YebW family protein | - |
| IHO92_RS12665 | 2577460..2578116 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2578213..2578484 | + | 272 | - | - | Antitoxin |
| - | 2578251..2578354 | - | 104 | - | - | Toxin |
| IHO92_RS12670 | 2578512..2578853 | - | 342 | WP_000976492.1 | YebY family protein | - |
| IHO92_RS12675 | 2578866..2579738 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| IHO92_RS12680 | 2579742..2580116 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| IHO92_RS12685 | 2580255..2580485 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IHO92_RS12690 | 2580587..2581243 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| IHO92_RS12695 | 2581267..2581929 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T289644 NZ_LR882493:c2578354-2578251 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT289644 NZ_LR882493:2578213-2578484 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
