Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) DinJ-YafQ (relBE)/YafQ-RelB
Location 2083713..2084254 Replicon chromosome
Accession NZ_LR882050
Organism Escherichia coli isolate 2016-02-324

Toxin (Protein)


Gene name yafQ Uniprot ID S1FHQ9
Locus tag IHP20_RS10250 Protein ID WP_000615979.1
Coordinates 2083976..2084254 (+) Length 93 a.a.

Antitoxin (Protein)


Gene name dinJ Uniprot ID S1EWQ0
Locus tag IHP20_RS10245 Protein ID WP_000729704.1
Coordinates 2083713..2083973 (+) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IHP20_RS10225 2079396..2080181 - 786 WP_000207587.1 putative lateral flagellar export/assembly protein LafU -
IHP20_RS10230 2080153..2081865 + 1713 Protein_2004 flagellar biosynthesis protein FlhA -
IHP20_RS10235 2082081..2082578 - 498 WP_000006261.1 REP-associated tyrosine transposase RayT -
IHP20_RS10240 2082754..2083527 - 774 WP_001353765.1 C40 family peptidase -
IHP20_RS10245 2083713..2083973 + 261 WP_000729704.1 type II toxin-antitoxin system antitoxin DinJ Antitoxin
IHP20_RS10250 2083976..2084254 + 279 WP_000615979.1 type II toxin-antitoxin system mRNA interferase toxin YafQ Toxin
IHP20_RS10255 2084410..2085150 + 741 WP_001225679.1 murein L,D-transpeptidase -
IHP20_RS10260 2085121..2085888 - 768 WP_000333379.1 class II glutamine amidotransferase -
IHP20_RS10265 2086094..2086672 - 579 WP_000284050.1 D-sedoheptulose 7-phosphate isomerase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(1-91)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(4-84)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10830.62 Da        Isoelectric Point: 10.0702

>T289571 WP_000615979.1 NZ_LR882050:2083976-2084254 [Escherichia coli]
MIQRDIEYSGQFSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLR
FERTGTHAALFG

Download         Length: 279 bp

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9391.77 Da        Isoelectric Point: 5.0758

>AT289571 WP_000729704.1 NZ_LR882050:2083713-2083973 [Escherichia coli]
MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVAREKALPFDLREPNQLTIQSIKNSEAGVDVHKAKDADDL
FDKLGI

Download         Length: 261 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB S1FHQ9

Antitoxin

Source ID Structure
PDB 4ML0
AlphaFold DB A0A0E0Y6Z6

References