Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 319840..320111 Replicon chromosome
Accession NZ_LR882050
Organism Escherichia coli isolate 2016-02-324

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 319970..320073 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 319840..320111 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IHP20_RS01485 316395..317057 - 663 WP_000944256.1 exodeoxyribonuclease X -
IHP20_RS01490 317081..317737 - 657 WP_000011657.1 carbon-nitrogen hydrolase family protein -
IHP20_RS01495 317839..318069 - 231 WP_000916763.1 DNA polymerase III subunit theta -
IHP20_RS01500 318208..318582 + 375 WP_000168747.1 CopC domain-containing protein YobA -
IHP20_RS01505 318586..319458 + 873 WP_191528452.1 copper homeostasis membrane protein CopD -
IHP20_RS01510 319471..319812 + 342 WP_072145846.1 YebY family protein -
- 319840..320111 - 272 - - Antitoxin
- 319970..320073 + 104 - - Toxin
IHP20_RS01515 320208..320864 + 657 WP_000812739.1 protein-serine/threonine phosphatase -
IHP20_RS01520 320865..321056 - 192 WP_001313035.1 YebW family protein -
IHP20_RS01525 321161..321397 - 237 WP_001295499.1 DUF1480 family protein -
IHP20_RS01530 321515..322954 - 1440 WP_024176540.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T289561 NZ_LR882050:319970-320073 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT289561 NZ_LR882050:c320111-319840 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References