Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1435408..1435576 | Replicon | chromosome |
| Accession | NC_020260 | ||
| Organism | Cronobacter sakazakii SP291 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1435470..1435573 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1435408..1435576 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSSP291_RS06845 | 1430558..1432621 | + | 2064 | WP_004386663.1 | oligopeptidase B | - |
| CSSP291_RS06850 | 1432618..1433280 | - | 663 | WP_004386664.1 | exodeoxyribonuclease X | - |
| CSSP291_RS06855 | 1433353..1433583 | - | 231 | WP_004386666.1 | DNA polymerase III subunit theta | - |
| CSSP291_RS06860 | 1433730..1434104 | + | 375 | WP_004386667.1 | CopC domain-containing protein YobA | - |
| CSSP291_RS06865 | 1434109..1434978 | + | 870 | WP_015386606.1 | copper homeostasis membrane protein CopD | - |
| CSSP291_RS06870 | 1434993..1435331 | + | 339 | WP_004386669.1 | YebY family protein | - |
| - | 1435408..1435576 | - | 169 | - | - | Antitoxin |
| - | 1435470..1435573 | + | 104 | - | - | Toxin |
| CSSP291_RS22845 | 1436032..1436361 | + | 330 | WP_012124471.1 | hypothetical protein | - |
| CSSP291_RS06880 | 1436315..1436650 | + | 336 | WP_004386671.1 | hypothetical protein | - |
| CSSP291_RS06885 | 1437447..1438091 | + | 645 | WP_004386674.1 | metallophosphoesterase | - |
| CSSP291_RS06890 | 1438092..1438283 | - | 192 | WP_004386675.1 | YebW family protein | - |
| CSSP291_RS06895 | 1438408..1438647 | - | 240 | WP_004386676.1 | YebV family protein | - |
| CSSP291_RS06900 | 1438759..1440201 | - | 1443 | WP_029464240.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T28940 NC_020260:1435470-1435573 [Cronobacter sakazakii SP291]
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 169 bp
>AT28940 NC_020260:c1435576-1435408 [Cronobacter sakazakii SP291]
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
